miRBase entry: spu-mir-182

Stem-loop spu-mir-182


Accession
MI0010206
Description
Strongylocentrotus purpuratus spu-mir-182 precursor miRNA

Literature search
1 open access papers mention spu-mir-182
(1 sentences)

Sequence

gccucuauuUUUGGCAAUUGAUAGAAUUCACACUguaaccucauuauguaaucagugguucucucauugccaagccuggug
(((......(((((((((.((.(((((...(((((.................)))))))))).)))))))))))...))).

Structure
-   ucuauu         U  U     UCA     uaaccuc 
 gcc      UUUGGCAAU GA AGAAU   CACUg       a
 |||      ||||||||| || |||||   |||||       u
 ugg      gaaccguua cu ucuug   gugac       u
g   ---ucc         -  c     ---     uaaugua 


Annotation confidence Not enough data
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Genome context
KN914066.1: 557726-557806 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from spu-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-182

Accession MIMAT0009670
Description Strongylocentrotus purpuratus spu-miR-182 mature miRNA
Sequence 10 - UUUGGCAAUUGAUAGAAUUCACACU - 34
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68