Stem-loop spu-mir-183

Accession

MI0010220

Description

Strongylocentrotus purpuratus spu-mir-183 precursor miRNA

Literature search

1 open access papers mention spu-mir-183
(2 sentences)

Sequence

uccucgucUAUGGCACUAUAGAAUUCACUGuguguuguguugccaugguaacagcugguucuacagugccauugcaugaugg
.(((((((.((((((((.(((((((..((((...(((((....)))))..))))..))))))).)))))))).).)))).))

Structure

u  -    - U        A       CA    gug     u 
 cc ucgu c AUGGCACU UAGAAUU  CUGu   uugug u
 || |||| | |||||||| |||||||  ||||   |||||  
 gg agua g uaccguga aucuugg  gaca   gguac g
-  u    c u        c       uc    -au     c 

Annotation confidence Low

Genome context

KN914066.1: 552684-552765 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from spu-mir-183

Mature spu-miR-183

• Accession: MIMAT0009684
• Description: Strongylocentrotus purpuratus spu-miR-183 mature miRNA
• Sequence: 9 - UAUGGCACUAUAGAAUUCACUG - 30
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68