Stem-loop spu-mir-2013

Accession

MI0010271

Description

Strongylocentrotus purpuratus spu-mir-2013 precursor miRNA mir-2013

Gene
family

RF03853; mir-2013

Sequence

ugaugucuacuguucuacgccgcuacaucuaguugcauugugacgucuguuucagggaaaUGCAGCAUGAUGUAGUGGUGUagcucaguaagaccauucca
....((((((((..(((((((((((((((..((((((((......((((...))))..))))))))..)))))))))))))))..)))).)))).......

Structure

---ugau    -    uu               ua        gugacg    u 
       gucu acug  cuacgccgcuacauc  guugcauu      ucug  
       |||| ||||  |||||||||||||||  ||||||||      |||| u
       caga ugac  gaUGUGGUGAUGUAG  CGACGUaa      ggac  
accuuac    a    uc               UA        ----ag    u 

Annotation confidence Not enough data

Genome context

KN920327.1: 71865-71965 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from spu-mir-2013

Mature spu-miR-2013

• Accession: MIMAT0009742
• Description: Strongylocentrotus purpuratus spu-miR-2013 mature miRNA
• Sequence: 61 - UGCAGCAUGAUGUAGUGGUGU - 81
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68