Stem-loop sma-let-7

Accession

MI0010673

Description

Schistosoma mansoni sma-let-7 precursor miRNA

Literature search

34 open access papers mention sma-let-7
(95 sentences)

Sequence

86991 reads, 21854.0 reads per million, 33 experiments

ugGGAGGUAGUUCGUUGUGUGGUUugcuugucaaaaugauuaaaagacCAUACAACCGACUGGCUUUCCcauu
((((((.(((((.((((((((((((....((((...))))....)))))))))))).))))).)..)))))..

Structure

--     -- G     C            gcuu    a 
  ugGGA  G UAGUU GUUGUGUGGUUu    guca  
  |||||  | ||||| ||||||||||||    |||| a
  acCCU  C GUCAG CAACAUACcaga    uagu  
uu     UU G     C            aaau    a 

Annotation confidence High

Genome context

7: 9125297-9125369 [-]

Mature sma-let-7-5p

• Accession: MIMAT0010180
• Description: Schistosoma mansoni sma-let-7-5p mature miRNA
• Sequence: 3 - GGAGGUAGUUCGUUGUGUGGUU - 24
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-let-7-3p

• Accession: MIMAT0032102
• Description: Schistosoma mansoni sma-let-7-3p mature miRNA
• Sequence: 49 - CAUACAACCGACUGGCUUUCC - 69
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 19107204
   Identification and characterization of novel microRNAs from Schistosoma japonicum
   Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W
   PLoS One (2008) 3:e4034


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402