Stem-loop sma-bantam

Accession

MI0010675

Description

Schistosoma mansoni sma-bantam precursor miRNA

Literature search

24 open access papers mention sma-bantam
(85 sentences)

Sequence

521301 reads, 68315.0 reads per million, 33 experiments

ggcaaguCGGCUUUUAUUGCGCUCUGAGAaaauuuauugucaucUGAGAUCGCGAUUAAAGCUGGUUuucca
((.(((((((((((.((((((.(((.(((..((.....))..))).))).)))))).))))))))))).)).

Structure

-  c           U      C   G   aa  u 
 gg aaguCGGCUUU AUUGCG UCU AGA  au u
 || ||||||||||| |||||| ||| |||  || a
 cc uUUGGUCGAAA UAGCGC AGA Ucu  ug u
a  u           U      U   G   ac  u 

Annotation confidence High

Genome context

6: 13296239-13296310 [-]

Mature sma-bantam-5p

• Accession: MIMAT0032104
• Description: Schistosoma mansoni sma-bantam-5p mature miRNA
• Sequence: 8 - CGGCUUUUAUUGCGCUCUGAGA - 29
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-bantam-3p

• Accession: MIMAT0010182
• Description: Schistosoma mansoni sma-bantam-3p mature miRNA
• Sequence: 45 - UGAGAUCGCGAUUAAAGCUGGUU - 67
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 19107204
   Identification and characterization of novel microRNAs from Schistosoma japonicum
   Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W
   PLoS One (2008) 3:e4034


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402