Stem-loop sma-mir-125a

Accession

MI0010676

Description

Schistosoma mansoni sma-mir-125a precursor miRNA

Literature search

5 open access papers mention sma-mir-125a
(13 sentences)

Sequence

169106 reads, 53616.0 reads per million, 33 experiments

gcUCCCUGAGACCCUUUGAUUGCCUuguuauuacaauacuguacauaacaugaucaggCAGCCAAAGUGACUCAGGUAUGCa
((..((((((.(.(((((.((((((((((((((((....)))).)))))).....)))))).))))).).))))))...)).

Structure

-  -UC      A C     A      -----      -    a 
 gc   CCUGAG C CUUUG UUGCCU     uguuau uaca u
 ||   |||||| | ||||| ||||||     |||||| ||||  
 CG   GGACUC G GAAAC GACgga     acaaua augu a
a  UAU      A U     C      cuagu      c    c 

Annotation confidence Medium

Genome context

7: 15003807-15003888 [-]

Mature sma-miR-125a-5p

• Accession: MIMAT0010183
• Description: Schistosoma mansoni sma-miR-125a-5p mature miRNA
• Sequence: 3 - UCCCUGAGACCCUUUGAUUGCCU - 25
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-125a-3p

• Accession: MIMAT0032105
• Description: Schistosoma mansoni sma-miR-125a-3p mature miRNA
• Sequence: 59 - CAGCCAAAGUGACUCAGGUAUGC - 81
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 19107204
   Identification and characterization of novel microRNAs from Schistosoma japonicum
   Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W
   PLoS One (2008) 3:e4034


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402