Accession
MI0010682
Description
Sus scrofa
ssc-mir-1 precursor miRNA
Literature search
97 open access papers mention ssc-mir-1
(632 sentences)
(632 sentences)
Sequence
1652072
reads,
1671.0
reads per million, 209 experiments
ccgguugacguaccugcuugggggACAUACUUCUUUAUGUGCCCauauggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUAUuucaggcugggaacucucaccgg
(((((.((.((.(((((((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))).))).))))..)))))
(((((.((.((.(((((((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))).))).))))..)))))
Structure
-u c a - g GC --- a
ccggu ga gu ccu gcuugggg ACAUACUUCUUUAUGU CCaua ugg c
||||| || || ||| |||||||| |||||||||||||||| ||||| ||| c
ggcca cu ca ggg cggacuuU UGUAUGAAGAAAUGUA GGUau auc u
cu - a u A -A cga g
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chr17: 69285393-69285500 [-]
Database links
Mature ssc-miR-1-5p
| Accession | MIMAT0052598 |
| Description | Sus scrofa ssc-miR-1-5p mature miRNA |
| Sequence | 25 - ACAUACUUCUUUAUGUGCCC - 44 |
| Evidence |
experimental
454 [1], Illumina [2,4-5], cloned [3] |
Mature ssc-miR-1-3p
| Accession | MIMAT0010187 |
| Description | Sus scrofa ssc-miR-1-3p mature miRNA |
| Sequence | 64 - UGGAAUGUAAAGAAGUAUGUAU - 85 |
| Evidence |
experimental
454 [1], Illumina [2,4-5], cloned [3] |
References
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