Stem-loop ssc-mir-503

Accession

MI0010684

Description

Sus scrofa ssc-mir-503 precursor miRNA

Literature search

5 open access papers mention ssc-mir-503
(7 sentences)

Sequence

273598 reads, 173.0 reads per million, 203 experiments

gccccgcacucagccgugcccUAGCAGCGGGAACAGUACUGCAGugggcgaucgguacucuGGGGUAUUGUUUCUGCUGCCCGGgcaaggcugggacucccgccggggc
(((((((.(((((((.(((((..(((((((((((((((((.(((.(.((.....)).).))).)))))))))))))))))..))))).)))))))......).))))))

Structure

      - -----a       g     UA                 G   u g  g 
gccccg c      cucagcc ugccc  GCAGCGGGAACAGUACU CAG g gc a
|||||| |      ||||||| |||||  ||||||||||||||||| ||| | || u
cggggc g      gggucgg acgGG  CGUCGUCUUUGUUAUGG Guc c ug c
      c cccuca       a     CC                 G   u a  g 

Annotation confidence High

Genome context

Unknown

Mature ssc-miR-503-5p

• Accession: MIMAT0010189
• Description: Sus scrofa ssc-miR-503-5p mature miRNA
• Sequence: 22 - UAGCAGCGGGAACAGUACUGCAG - 44
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature ssc-miR-503-3p

• Accession: MIMAT0052600
• Description: Sus scrofa ssc-miR-503-3p mature miRNA
• Sequence: 62 - GGGGUAUUGUUUCUGCUGCCCGG - 84
• Evidence: experimental ; 454 [1], Illumina [2-3]

References

1. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328