Stem-loop ssc-mir-146b

Accession

MI0010685

Description

Sus scrofa ssc-mir-146b precursor miRNA

Literature search

21 open access papers mention ssc-mir-146b
(116 sentences)

Sequence

147 reads, 179 reads per million, 12 experiments

gaacuuuggccaccuggcucUGAGAACUGAAUUCCAUAGGCugugagcucuagcaaaugcccuaggaacucaguucuggugcccggcugugcuauaguc
..(((.((((((((.(((.((.((((((((.((((.((((.(((..((....))..))).)))))))).)))))))))).))).)).)).)))).))).

Structure

ga   u    -  -  u   u  G        A    A    C   ga  u 
  acu uggc ca cc ggc cU AGAACUGA UUCC UAGG ugu  gc c
  ||| |||| || || ||| || |||||||| |||| |||| |||  ||  
  uga aucg gu gg ccg gg ucuugacu aagg aucc gua  cg u
-c   u    u  c  c   u  -        c    -    c   aa  a 

Annotation confidence Not enough data

Genome context

chr14: 123301752-123301850 [+]

Mature ssc-miR-146b

• Accession: MIMAT0010190
• Description: Sus scrofa ssc-miR-146b mature miRNA
• Sequence: 21 - UGAGAACUGAAUUCCAUAGGC - 41
• Evidence: experimental ; 454 [1], Illumina [2-4]

References

1. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100