Accession
MI0010686
Description
Sus scrofa
ssc-mir-181a-1 precursor miRNA
Literature search
33 open access papers mention ssc-mir-181a-1
(175 sentences)
(175 sentences)
Sequence
18661802
reads,
12506.0
reads per million, 213 experiments
gaguuuagagguugcuucagugAACAUUCAACGCUGUCGGUGAGUUuggaauucaaaucaaaACCAUCGACCGUUGAUUGUACCcuauggccaaccaucagcuc
(((((..(((((((((..((.(.(((.((((((..(((((((.((((.((.......)).))))))))))))))))).))).).))..)).))))).)))))))
(((((..(((((((((..((.(.(((.((((((..(((((((.((((.((.......)).))))))))))))))))).))).).))..)).))))).)))))))
Structure
ua - - uc u A U CU A g au
gaguu ga gguug cu ag g ACA UCAACG GUCGGUG GUUu ga u
||||| || ||||| || || | ||| |||||| ||||||| |||| || c
cucga cu ccaac gg uc C UGU AGUUGC CAGCUAC CAaa cu a
-- a c ua C A U -- - a aa
Annotation confidence
High
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Genome context
chr10: 26427018-26427121 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-181a-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-181a-5p
| Accession | MIMAT0010191 |
| Description | Sus scrofa ssc-miR-181a-5p mature miRNA |
| Sequence | 23 - AACAUUCAACGCUGUCGGUGAGUU - 46 |
| Evidence |
experimental
Illumina [1,3-4], cloned [2] |
Mature ssc-miR-181a-1-3p
| Accession | MIMAT0052602 |
| Description | Sus scrofa ssc-miR-181a-1-3p mature miRNA |
| Sequence | 63 - ACCAUCGACCGUUGAUUGUACC - 84 |
| Evidence |
experimental
Illumina [1,3-4], cloned [2] |
References
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