Stem-loop dme-mir-2279

Accession

MI0011289

Description

Drosophila melanogaster dme-mir-2279 precursor miRNA

Literature search

1 open access papers mention dme-mir-2279
(1 sentences)

Sequence

335 reads, 10 reads per million, 42 experiments

cgggagaggauuaugaaagacaauuugaaaUUAAAUAUCUGUGUGUGAAAUUauuuaaaagauuaaUUUCACGCGAAGAUAUUUAUUUuuacauuugucccuauaauaaccgg
(((......((((((...(((((..(((((.(((((((((.((((((((((((.((....)).)))))))))))).))))))))).)))))...)))))..))))))..))).

Structure

-   gagagg      aaa     -uu     U         G            u  a 
 cgg      auuaug   gacaa   ugaaa UAAAUAUCU UGUGUGAAAUUa uu a
 |||      ||||||   |||||   ||||| ||||||||| |||||||||||| ||  
 gcc      uaauau   cuguu   auuUU AUUUAUAGA GCGCACUUUaau ag a
g   ----aa      -cc     uac     U         A            u  a 

Annotation confidence High

Genome context

chr2R: 2552170-2552282 [-]

Mature dme-miR-2279-5p

• Accession: MIMAT0011784
• Description: Drosophila melanogaster dme-miR-2279-5p mature miRNA
• Sequence: 31 - UUAAAUAUCUGUGUGUGAAAUU - 52
• Evidence: experimental ; 454 [1], Illumina [2]

Mature dme-miR-2279-3p

• Accession: MIMAT0011785
• Description: Drosophila melanogaster dme-miR-2279-3p mature miRNA
• Sequence: 67 - UUUCACGCGAAGAUAUUUAUUU - 88
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9


2. PubMed ID: 19541914
   Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line
   "Lau NC, Robine N, Martin R, Chung WJ, Niki Y, Berezikov E, Lai EC"
   "Genome Res (2009) 19:1776-1785