Stem-loop xtr-mir-2184

Accession

MI0011553

Description

Xenopus tropicalis xtr-mir-2184 precursor miRNA

Sequence

27864 reads, 3959.0 reads per million, 4 experiments

cuugcgucucggAACAGUAAGAGAUUAUGUGCUGuguuaucaggcagccggCACAUGGCCUUUUACUGCUCagagaggcagg
(((((.((((.((.(((((((((.((((((((((.(((.......))))))))))))).))))))))).)).)))).)))))

Structure

     g    g  A         A          u   au 
cuugc ucuc gA CAGUAAGAG UUAUGUGCUG guu  c
||||| |||| || ||||||||| |||||||||| |||  a
ggacg agag CU GUCAUUUUC GGUACACggc cga  g
     g    a  C         C          -   cg 

Annotation confidence Medium

Genome context

2: 35293733-35293814 [-]

Mature xtr-miR-2184-5p

• Accession: MIMAT0012192
• Description: Xenopus tropicalis xtr-miR-2184-5p mature miRNA
• Sequence: 13 - AACAGUAAGAGAUUAUGUGCUG - 34
• Evidence: experimental ; Illumina [1]

Mature xtr-miR-2184-3p

• Accession: MIMAT0052180
• Description: Xenopus tropicalis xtr-miR-2184-3p mature miRNA
• Sequence: 52 - CACAUGGCCUUUUACUGCUC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19628731
   Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis
   "Armisen J, Gilchrist MJ, Wilczynska A, Standart N, Miska EA"
   "Genome Res (2009) 19:1766-1775