Stem-loop xtr-mir-2188

Accession

MI0011554

Description

Xenopus tropicalis xtr-mir-2188 precursor miRNA

Sequence

43354 reads, 3975.0 reads per million, 4 experiments

gggcgugugggaAAGGUCCAGCCUCAUAUGUCCUgugauccugagggggAGAUAUGUGGUCAGACCUGUCccacaggccgug
.(((.(((((((.(((((..(((.(((((.((((.(........).)))).))))).)))..))))).))))))).)))...

Structure

--g   g       A     CA   U     G    g gau 
   ggc uguggga AGGUC  GCC CAUAU UCCU u   c
   ||| ||||||| |||||  ||| ||||| |||| |    
   ccg acaccCU UCCAG  UGG GUAUA Aggg g   c
gug   g       G     AC   U     G    g agu 

Annotation confidence High

Genome context

3: 130396690-130396771 [-]

Mature xtr-miR-2188-5p

• Accession: MIMAT0012193
• Description: Xenopus tropicalis xtr-miR-2188-5p mature miRNA
• Sequence: 13 - AAGGUCCAGCCUCAUAUGUCCU - 34
• Evidence: experimental ; Illumina [1]

Mature xtr-miR-2188-3p

• Accession: MIMAT0052181
• Description: Xenopus tropicalis xtr-miR-2188-3p mature miRNA
• Sequence: 50 - AGAUAUGUGGUCAGACCUGUC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19628731
   Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis
   "Armisen J, Gilchrist MJ, Wilczynska A, Standart N, Miska EA"
   "Genome Res (2009) 19:1766-1775