Stem-loop dps-mir-968

Accession

MI0011605

Description

Drosophila pseudoobscura dps-mir-968 precursor miRNA

Sequence

uaguucuacaauugcugcagcuuccuUAAGUAGUAUCCAUUAAGAGGUCGucaucuagcuaaaaucGACCUUUUGAUGUACUACUUUAAAaaagcacagucaaagucaacagaacug
(((((((((..((((((..((((..((((((((((..(((((((((((((...............))))))))))))))))))).))))..)))).))).))).))....)))))))

Structure

       ----  aa   -   ca    cc    -      UC             ucaucu 
uaguucu    ac  uug cug  gcuu  uUAA GUAGUA  CAUUAAGAGGUCG      a
|||||||    ||  ||| |||  ||||  |||| ||||||  |||||||||||||      g
gucaaga    ug  aac gac  cgaa  AAUU CAUCAU  GUAGUUUUCCAGc      c
       caac  -a   u   -a    aA    U      --             uaaaau 

Annotation confidence Not enough data

Genome context

4_group1: 1722779-1722895 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-968

Mature dps-miR-968-5p

• Accession: MIMAT0012245
• Description: Drosophila pseudoobscura dps-miR-968-5p mature miRNA
• Sequence: 27 - UAAGUAGUAUCCAUUAAGAGGUCG - 50
• Evidence: experimental ; Illumina [1]

Mature dps-miR-968-3p

• Accession: MIMAT0012246
• Description: Drosophila pseudoobscura dps-miR-968-3p mature miRNA
• Sequence: 67 - GACCUUUUGAUGUACUACUUUAAA - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9