Stem-loop dps-mir-1002

Accession

MI0011606

Description

Drosophila pseudoobscura dps-mir-1002 precursor miRNA

Sequence

ggcagguccucucaaaauaaucgggcacCUAAGUAGUUGAUACAAGGGCGAuaauguaaaagaacuuucGCAUUGUGUGACCUACUUAAAUgcucgauuguuucaagcaaccucua
((.((((...((..(((((((((((((..(((((((.(.((((((..((((....((......))..)))).)))))).).)))))))..)))))))))))))..))..)))))).

Structure

-  c    ccu  ca             cC       U G      GG    uaau  aa 
 gg aggu   cu  aaauaaucgggca  UAAGUAG U AUACAA  GCGA    gu  a
 || ||||   ||  |||||||||||||  ||||||| | ||||||  ||||    ||   
 uc ucca   ga  uuuguuagcucgU  AUUCAUC A UGUGUU  CGcu    ca  a
a  -    -ac  ac             AA       C G      -A    --uu  ag 

Annotation confidence Not enough data

Genome context

4_group1: 1722916-1723031 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-1002

Mature dps-miR-1002-5p

• Accession: MIMAT0012247
• Description: Drosophila pseudoobscura dps-miR-1002-5p mature miRNA
• Sequence: 29 - CUAAGUAGUUGAUACAAGGGCGA - 51
• Evidence: experimental ; Illumina [1]

Mature dps-miR-1002-3p

• Accession: MIMAT0012248
• Description: Drosophila pseudoobscura dps-miR-1002-3p mature miRNA
• Sequence: 70 - GCAUUGUGUGACCUACUUAAAU - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9