Stem-loop dps-mir-969

Accession

MI0011620

Description

Drosophila pseudoobscura dps-mir-969 precursor miRNA

Sequence

aggagccuguucuacgugcGAGUUCCACCAUGCAAGUUUUgagcguauaugaauccaaaAACUUGACACGUUGAGCUCGUgcguggugcagccaaaucaucgcagcgcaucc
.(((((((((.((((((((((((((.((..((((((((((.................)))))))).)).)).)))))))))))))).))))...............)).)))

Structure

a   -  ---------------    u              C  CA  -        gagcgua 
 gga gc               cugu cuacgugcGAGUUC AC  UG CAAGUUUU       u
 ||| ||               |||| |||||||||||||| ||  || ||||||||       a
 ccu cg               gacg ggugcgUGCUCGAG UG  AC GUUCAAaa       u
-   a  cgacgcuacuaaacc    u              U  -C  A        accuaag 

Annotation confidence Not enough data

Genome context

XL_group3a: 1977493-1977604 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dps-mir-969

Mature dps-miR-969-5p

• Accession: MIMAT0012275
• Description: Drosophila pseudoobscura dps-miR-969-5p mature miRNA
• Sequence: 20 - GAGUUCCACCAUGCAAGUUUU - 40
• Evidence: experimental ; Illumina [1]

Mature dps-miR-969-3p

• Accession: MIMAT0012276
• Description: Drosophila pseudoobscura dps-miR-969-3p mature miRNA
• Sequence: 60 - AACUUGACACGUUGAGCUCGU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9