miRBase entry: dps-mir-2510

Stem-loop dps-mir-2510


Accession
MI0011636
Description
Drosophila pseudoobscura dps-mir-2510 precursor miRNA


Sequence

12281 reads, 99.0 reads per million, 20 experiments
guuuugaauucacauucugcauUGAAAAAGCAAUGGAUAAUAGAauguauuugcaaauucUAUUGUUCCUUGCUUUUCCUAAgcgggaugggggagcagucgucgca
............((((((((...(.((((((((.((((((((((((..........)))))))))))).)))))))).)...))))))))((.((....)).))...

Structure
-----guuuugaauuca        auU A        U            guau 
                 cauucugc   G AAAAGCAA GGAUAAUAGAau    u
                 ||||||||   | |||||||| ||||||||||||     
                 guagggcg   C UUUUCGUU CUUGUUAUcuua    u
acgcugcugacgagggg        AAU C        C            aacg 


Annotation confidence High
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Genome context
ref|NC_046681.1|: 5946829-5946935 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dps-mir-2510
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2510-5p

Accession MIMAT0012295
Description Drosophila pseudoobscura dps-miR-2510-5p mature miRNA
Sequence 23 - UGAAAAAGCAAUGGAUAAUAGA - 44
Evidence experimental
Illumina [1]

Mature dps-miR-2510-3p

Accession MIMAT0053427
Description Drosophila pseudoobscura dps-miR-2510-3p mature miRNA
Sequence 61 - UAUUGUUCCUUGCUUUUCCUAA - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9