miRBase entry: dps-mir-2518-2

Stem-loop dps-mir-2518-2


Accession
MI0011644
Description
Drosophila pseudoobscura dps-mir-2518-2 precursor miRNA


Sequence

1069 reads, 8.0 reads per million, 18 experiments
gggcagccacacacacacacgaccguuucgaccccguugcgaaucgaacuugguuugaguucgagcagCGGGUCGAUCCGAGCCAUAGCCCA
((((................(..((..(((((((.(((((...((((((((.....))))))))))))))))))))..))..)....)))).

Structure
-    agccacacacacacac ac  uu       c     gaa        g 
 gggc                g  cg  ucgaccc guugc   ucgaacuu g
 ||||                |  ||  ||||||| |||||   |||||||| u
 CCCG                C  GC  AGCUGGG Cgacg   agcuugag u
A    ------------AUAC GA  CU       -     ---        u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ref|NW_022881705.1|: 67778-67871 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from dps-mir-2518-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2518-3p

Accession MIMAT0012301
Description Drosophila pseudoobscura dps-miR-2518-3p mature miRNA
Sequence 69 - CGGGUCGAUCCGAGCCAUAGCCCA - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9