miRBase entry: dps-mir-2518-4

Stem-loop dps-mir-2518-4


Accession
MI0011645
Description
Drosophila pseudoobscura dps-mir-2518-4 precursor miRNA


Sequence

1247 reads, 9.0 reads per million, 18 experiments
cggccaacgggcagccacacacacacacaCGACCGGAUCGAACCCGUUGCGaaucgaacuugguuugaguucgagcagCGGGUCGAUCCGAGCCAUAGCCCAgcc
.(((....((((..................(..((((((((.((((((((...((((((((.....))))))))))))))))))))))))..)....)))).)))

Structure
c   caac    agccacacacacacacaC AC        A        Gaa        g 
 ggc    gggc                  G  CGGAUCGA CCCGUUGC   ucgaacuu g
 |||    ||||                  |  |||||||| ||||||||   |||||||| u
 ccg    CCCG                  C  GCCUAGCU GGGCgacg   agcuugag u
-   ---A    --------------AUAC GA        -        ---        u 


Annotation confidence Low
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Genome context
ref|NC_046683.1|: 62921-63025 [+]

Database links

Mature dps-miR-2518-5p

Accession MIMAT0053430
Description Drosophila pseudoobscura dps-miR-2518-5p mature miRNA
Sequence 30 - CGACCGGAUCGAACCCGUUGCG - 51
Evidence experimental
Illumina [1]

Mature dps-miR-2518-3p

Accession MIMAT0012301
Description Drosophila pseudoobscura dps-miR-2518-3p mature miRNA
Sequence 79 - CGGGUCGAUCCGAGCCAUAGCCCA - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9