Stem-loop dps-mir-2518-1

Accession

MI0011649

Description

Drosophila pseudoobscura dps-mir-2518-1 precursor miRNA

Sequence

1204 reads, 9.0 reads per million, 18 experiments

gggcagccacacacacaCGACCGGAUCGAACCCGUUGugaaucgaacuugguucgaguucgagcagCGGGUCGAUCCGAGCCAUAGCCCA
((((..............(..((((((((.((((((((...(((((((((...)))))))))))))))))))))))))..)....)))).

Structure

-    agccacacacacaC AC        A        gaa         g 
 gggc              G  CGGAUCGA CCCGUUGu   ucgaacuug  
 ||||              |  |||||||| ||||||||   ||||||||| u
 CCCG              C  GCCUAGCU GGGCgacg   agcuugagc  
A    ----------AUAC GA        -        ---         u 

Annotation confidence Low

Genome context

ref|NW_022881705.1|: 67778-67871 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dps-mir-2518-1

Mature dps-miR-2518-1-5p

• Accession: MIMAT0053431
• Description: Drosophila pseudoobscura dps-miR-2518-1-5p mature miRNA
• Sequence: 18 - CGACCGGAUCGAACCCGUUG - 37
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2518-3p

• Accession: MIMAT0012301
• Description: Drosophila pseudoobscura dps-miR-2518-3p mature miRNA
• Sequence: 67 - CGGGUCGAUCCGAGCCAUAGCCCA - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9