miRBase entry: dps-mir-2528-1

Stem-loop dps-mir-2528-1


Accession
MI0011662
Description
Drosophila pseudoobscura dps-mir-2528-1 precursor miRNA


Sequence

808 reads, 14.0 reads per million, 19 experiments
acggaauuuuacguauucauccgUUUUGUCUGUAUCGCGAAGUUUGGAgucguuuuuguugaagcgauuccacgcauuuuuugagugcugauauuuuggcUUGAAAAUAAGAGGCCGU
((((..(((((....((((.(((...((((.((((((.(((((.((((((((((((....))))))))))))...))))).))).))).))))...)))..))))..)))))..))))

Structure
    aa     cgua    -u   UUU    U   -   C     --U            u 
acgg  uuuua    uuca  ccg   UGUC GUA UCG GAAGU   UGGAgucguuuu g
||||  |||||    ||||  |||   |||| ||| ||| |||||   ||||||||||||  
UGCC  AGAAU    AAGU  ggu   auag cgu agu uuuua   accuuagcgaag u
    GG     --AA    Uc   uuu    u   g   u     cgc            u 


Annotation confidence Low
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Genome context
ref|NC_046683.1|: 31259156-31259273 [-]

Database links

Mature dps-miR-2528-5p

Accession MIMAT0012306
Description Drosophila pseudoobscura dps-miR-2528-5p mature miRNA
Sequence 24 - UUUUGUCUGUAUCGCGAAGUUUGGA - 48
Evidence experimental
Illumina [1]

Mature dps-miR-2528-1-3p

Accession MIMAT0053441
Description Drosophila pseudoobscura dps-miR-2528-1-3p mature miRNA
Sequence 101 - UUGAAAAUAAGAGGCCGU - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9