Stem-loop dps-mir-2533

Accession

MI0011667

Description

Drosophila pseudoobscura dps-mir-2533 precursor miRNA

Sequence

1122 reads, 19.0 reads per million, 19 experiments

cgcgauguuggcuggaguguucUUCUGGCAGUUGGCCGGCCCAUCuucguccucgcucacguccgaguaugggcccgucguggccagcucggccUCCAGUUGGCGGUUUAGC
.((..((((((((((((.(((...(((((...((((.(((((((.((((....((....))..)))).))))))).))))..)))))...))))))))))))))).....))

Structure

c  ---ga            u   cUU     AGU    C       C    uccu  c 
 gc     uguuggcuggag guu   CUGGC   UGGC GGCCCAU uucg    cg u
 ||     |||||||||||| |||   |||||   |||| ||||||| ||||    ||  
 CG     GCGGUUGACCUc cgg   gaccg   gcug ccgggua gagc    gc c
-  AUUUG            -   cuc     -gu    c       u    --cu  a 

Annotation confidence Low

Genome context

ref|NC_046680.1|: 1766812-1766923 [+]

Mature dps-miR-2533-5p

• Accession: MIMAT0012322
• Description: Drosophila pseudoobscura dps-miR-2533-5p mature miRNA
• Sequence: 23 - UUCUGGCAGUUGGCCGGCCCAUC - 45
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2533-3p

• Accession: MIMAT0053447
• Description: Drosophila pseudoobscura dps-miR-2533-3p mature miRNA
• Sequence: 95 - UCCAGUUGGCGGUUUAGC - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9