miRBase entry: dps-mir-2552

Stem-loop dps-mir-2552

Accession

MI0011694

Description

Drosophila pseudoobscura dps-mir-2552 precursor miRNA

Sequence

guauaugguuuuuggaagaauugUGAGGUCAAAUUGAACGCAUUUcgaguauuguugcaaAUGUGUAUAAUUUGGCCAUCAUAuuuauccaaaaugagcaucgccaaaugugc
((((((((((((((((.((((.((((((((((((((.(((((((((((......))).)))))))).)))))))))).)))))))).)))))))........))))..)))))

Structure

     --    --------       a    u    -          A        -   gu 
guaua  uggu        uuuugga gaau gUGA GGUCAAAUUG ACGCAUUU cga  a
|||||  ||||        ||||||| |||| |||| |||||||||| |||||||| |||   
cgugu  accg        aaaaccu uuuA UACU CCGGUUUAAU UGUGUAaa guu  u
     aa    cuacgagu       a    -    A          A        c   gu

Annotation confidence Not enough data

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Genome context

3: 8679230-8679342 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from dps-mir-2552

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2552-5p

Accession	MIMAT0012364
Description	Drosophila pseudoobscura dps-miR-2552-5p mature miRNA
Sequence	24 - UGAGGUCAAAUUGAACGCAUUU - 45
Evidence	experimental Illumina [1]

Mature dps-miR-2552-3p

Accession	MIMAT0012365
Description	Drosophila pseudoobscura dps-miR-2552-3p mature miRNA
Sequence	61 - AUGUGUAUAAUUUGGCCAUCAUA - 83
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9