miRBase entry: dps-mir-2558-1

Stem-loop dps-mir-2558-1

Accession

MI0011701

Description

Drosophila pseudoobscura dps-mir-2558-1 precursor miRNA

Sequence

uaugguuagGUAGGUACCCAAAUAUCUUGAUuauaauuuuccuuuaggaacuuacaCAGAUAUUUCUGUACCUACAGgaauugu
.........((((((((..((((((((((....(((..((((....)))).))))).))))))))..)))))))).........

Structure

uaugguuag        CC        -  AUua   uu    u 
         GUAGGUAC  AAAUAUCU UG    uaa  uucc u
         ||||||||  |||||||| ||    |||  ||||  
         CAUCCAUG  UUUAUAGA ac    auu  aagg u
uguuaagGA        UC        C  ----   -c    a

Annotation confidence Not enough data

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Genome context

4_group1: 2593451-2593534 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-2558-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2558-5p

Accession	MIMAT0012378
Description	Drosophila pseudoobscura dps-miR-2558-5p mature miRNA
Sequence	10 - GUAGGUACCCAAAUAUCUUGAU - 31
Evidence	experimental Illumina [1]

Mature dps-miR-2558-3p

Accession	MIMAT0012379
Description	Drosophila pseudoobscura dps-miR-2558-3p mature miRNA
Sequence	57 - CAGAUAUUUCUGUACCUACAG - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9