Stem-loop dps-mir-2568b

Accession

MI0011718

Description

Drosophila pseudoobscura dps-mir-2568b precursor miRNA

Sequence

gguuuuucgucgggaguuccaucgccGCAAACUUCCUCGGGUCAUGGcuguacuuuuucaaaaccccAUGGCCCGAGGAUGUUGCCUgugauccagcucaaaaucaaaacgaugugaaua
.((((..(((((.(((((..(((((.((((.(.((((((((((((((..((...........)).)))))))))))))).)))))..)))))..)))))..........))))).)))).

Structure

g    uu     ---------g     cc     -c    A U              cu  acuu 
 guuu  cgucg          gaguu  aucgc  GCAA C UCCUCGGGUCAUGG  gu    u
 ||||  |||||          |||||  |||||  |||| | ||||||||||||||  ||    u
 uaag  guagc          cucga  uagug  CGUU G AGGAGCCCGGUAcc  ca    u
a    -u     aaaacuaaaa     cc     UC    - U              -c  aaac 

Annotation confidence Not enough data

Genome context

4_group5: 2251087-2251206 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-2568b

Mature dps-miR-2568b-5p

• Accession: MIMAT0012408
• Description: Drosophila pseudoobscura dps-miR-2568b-5p mature miRNA
• Sequence: 27 - GCAAACUUCCUCGGGUCAUGG - 47
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2568b-3p

• Accession: MIMAT0012409
• Description: Drosophila pseudoobscura dps-miR-2568b-3p mature miRNA
• Sequence: 68 - AUGGCCCGAGGAUGUUGCCU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9