Stem-loop mtr-MIR169k

Accession

MI0011795

Description

Medicago truncatula mtr-MIR169k precursor miRNA

Literature search

12 open access papers mention mtr-MIR169k
(50 sentences)

Sequence

1522 reads, 17.0 reads per million, 103 experiments

gaagguagagagaguggauuUGAGCCAGGAUGGCUUGCCGGcaugcauuuuaggguguugcuAGCGGGCCAUCUUGUCUCACAuuugcuaucuuuccucu
..(((.(((((.(((((((.((((.(((((((((((((.((((.(((((....))))))))).))))))))))))).)))).))))))).))))))))..

Structure

ga   u     g       u    C             C    u     u 
  agg agaga aguggau UGAG CAGGAUGGCUUGC GGca gcauu u
  ||| ||||| ||||||| |||| ||||||||||||| |||| |||||  
  ucc uuucu ucguuuA ACUC GUUCUACCGGGCG ucgu ugugg a
uc   -     a       C    U             A    -     g 

Annotation confidence High

Genome context

Unknown

Mature mtr-miR169k-5p

• Accession: MIMAT0013248
• Description: Medicago truncatula mtr-miR169k-5p mature miRNA
• Sequence: 21 - UGAGCCAGGAUGGCUUGCCGG - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR169k-3p

• Accession: MIMAT0054796
• Description: Medicago truncatula mtr-miR169k-3p mature miRNA
• Sequence: 63 - AGCGGGCCAUCUUGUCUCACA - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796