miRBase entry: mtr-MIR2587a

Stem-loop mtr-MIR2587a


Accession
MI0011799
Description
Medicago truncatula mtr-MIR2587a precursor miRNA


Sequence

10029 reads, 102.0 reads per million, 111 experiments
cgauggugucauggucauugUUGACCGUUCAUAUGAACCCUGcaauugcaaugcauuuuaacuuguGUGGGGUUCAUAUAACGGUCAAuagagacccuugacauaaaaga
.....((((((.((((.((((((((((((.((((((((((((((..(((...)))..........)))))))))))))))))))))))))).))))..))))))......

Structure
-cgaug      -u    a            C              --------au   a 
      guguca  gguc uugUUGACCGUU AUAUGAACCCUGca          ugc  
      ||||||  |||| |||||||||||| ||||||||||||||          ||| a
      uacagu  ccag gauAACUGGCAA UAUACUUGGGGUGu          acg  
agaaaa      uc    a            -              guucaauuuu   u 


Annotation confidence Medium
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Genome context
chr7: 26611343-26611452 [-]

Database links

Mature mtr-miR2587a-5p

Accession MIMAT0013252
Description Medicago truncatula mtr-miR2587a-5p mature miRNA
Sequence 21 - UUGACCGUUCAUAUGAACCCUG - 42
Evidence experimental
454 [1]

Mature mtr-miR2587a-3p

Accession MIMAT0054800
Description Medicago truncatula mtr-miR2587a-3p mature miRNA
Sequence 67 - GUGGGGUUCAUAUAACGGUCAA - 88
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796