Stem-loop mtr-MIR2592b

Accession

MI0011815

Description

Medicago truncatula mtr-MIR2592b precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592b
(2 sentences)

Sequence

57101 reads, 410.0 reads per million, 111 experiments

aaauucaaaccugcaaaaCAACAGGACUCAAGCAUUUCGccaaacaccucauguuuucccuuugaaaauaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaaaaauuuaauauuuucaaaggagaaacaugaggugcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauua
.(((((((((.((..(((((((((((((((((((((((((.((.(((((((((((((.((((((((((((.(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...))))))))))).)))))))))))).))))))))))))).)))))))))))))))))))))))))))..)).))))))))).

Structure

a         c  ca                         c  a             c            a           gag   u c         u      c     c  cc  a    g 
 aauucaaac ug  aaaCAACAGGACUCAAGCAUUUCGc aa caccucauguuuu ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug ca  ga uuga  
 ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
 uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaag ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
a         a  ag                         -  c             a            a           aua   c -         u      -     a  uc  -    u 

Annotation confidence High

Genome context

chr2: 4195488-4195736 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592b

Mature mtr-miR2592b-5p

• Accession: MIMAT0026924
• Description: Medicago truncatula mtr-miR2592b-5p mature miRNA
• Sequence: 19 - CAACAGGACUCAAGCAUUUCG - 39
• Evidence: experimental ; Illumina [2]

Mature mtr-miR2592b-3p

• Accession: MIMAT0013268
• Description: Medicago truncatula mtr-miR2592b-3p mature miRNA
• Sequence: 213 - AAAUGCUUGAGUCCUGUUGUU - 233
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105