Stem-loop mtr-MIR2592s

Accession

MI0011826

Description

Medicago truncatula mtr-MIR2592s precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592s
(2 sentences)

Sequence

44715 reads, 362.0 reads per million, 111 experiments

agauaaauucaaaccugucaAACAACAGGACUCAAGCAUUUCGCucgacguucauguuuuccuuugaaaagaauaaauuuuuguuaggcuugcuuuagaugaugauauucaagugacaacgaaaugagguucauuccuugacacuuaauaccuucaucuaaaccagccuaacaaaaauuuaaucuuuucAAAGGAAAAACAUGAAUGCCGAGCgaaaugcuugagucauguuguuuggcagguuugaauuuauc
.((((((((((((((((((((((((((.(((((((((((((((((((.((((((((((((((((((((((((.(((((((((((((((((.(.(((((((((.(.((((.(((((.(((.(((.(((...)))))).))).))))))))).).)))))))))).))))))))))))))))).)))))))))))).)))))))))))).))))))))))))))))))).))))))))))))))))))))))))))

Structure

a                          G                   a            -            a                 u c         u a    c     a   c   a   g 
 gauaaauucaaaccugucaAACAACA GACUCAAGCAUUUCGCucg cguucauguuuu ccuuugaaaaga uaaauuuuuguuaggcu g uuuagauga g uauu aagug caa gaa uga  
 |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| | ||||||||| | |||| ||||| ||| ||| ||| g
 cuauuuaaguuuggacgguuuguugu cugaguucguaaagCGAGC GUAAGUACAAAA GGAAAcuuuucu auuuaaaaacaauccga c aaaucuacu c auaa uucac guu cuu acu  
-                          a                   C            A            a                 c -         u c    -     a   c   -   u 

Annotation confidence Low

Genome context

chr6: 18079450-18079703 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592s

Mature mtr-miR2592s-5p

• Accession: MIMAT0026925
• Description: Medicago truncatula mtr-miR2592s-5p mature miRNA
• Sequence: 21 - AACAACAGGACUCAAGCAUUUCGC - 44
• Evidence: experimental ; Illumina [2]

Mature mtr-miR2592s-3p

• Accession: MIMAT0013279
• Description: Medicago truncatula mtr-miR2592s-3p mature miRNA
• Sequence: 190 - AAAGGAAAAACAUGAAUGCCGAGC - 213
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105