Stem-loop mtr-MIR2593c

Accession

MI0011829

Description

Medicago truncatula mtr-MIR2593c precursor miRNA

Sequence

27037 reads, 294.0 reads per million, 111 experiments

uuauaagcaaaaguuuacauUUUAGAUUCAUUCAUUUAAUGaugcacauggucuuuauuauagaccacauacaucaUUAAAUGAAUGAACCUAGAAUauaguuuuuugcuuauau
.((((((((((((.(((.(((((((.((((((((((((((((((....((((((.......))))))....)))))))))))))))))).))))))).))).)))))))))))).

Structure

u            u   c       A                  caca      uu 
 uauaagcaaaag uua auUUUAG UUCAUUCAUUUAAUGaug    uggucu  a
 |||||||||||| ||| ||||||| ||||||||||||||||||    ||||||  u
 auauucguuuuu gau UAAGAUC AAGUAAGUAAAUUacuac    accaga  u
u            u   a       C                  auac      ua 

Annotation confidence Medium

Genome context

chr3: 27953809-27953923 [+]

Mature mtr-miR2593c-5p

• Accession: MIMAT0054824
• Description: Medicago truncatula mtr-miR2593c-5p mature miRNA
• Sequence: 21 - UUUAGAUUCAUUCAUUUAAUG - 41
• Evidence: experimental ; unknown

Mature mtr-miR2593c-3p

• Accession: MIMAT0013282
• Description: Medicago truncatula mtr-miR2593c-3p mature miRNA
• Sequence: 77 - UUAAAUGAAUGAACCUAGAAU - 97
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796