Stem-loop mtr-MIR2111c

Accession

MI0011836

Description

Medicago truncatula mtr-MIR2111c precursor miRNA

Literature search

3 open access papers mention mtr-MIR2111c
(9 sentences)

Sequence

94637 reads, 662.0 reads per million, 111 experiments

agauugggaucagaugagaUAAUCUGCAUCCUGAGGUUUAgaacaaucgaugcguaacuguaucuaAGCCUUAGAAUGCAGAUUAUCucuuccuuaucaccaaugca
..((((((((..((.((((((((((((((.(((((((((((((((.............))).)))))))))))).)))))))))))))).))...))).)))))...

Structure

-ag     -   -ca  u              C            -   aucga 
   auugg gau   ga gagaUAAUCUGCAU CUGAGGUUUAga aca     u
   ||||| |||   || |||||||||||||| |||||||||||| |||     g
   uaacc cua   cu cuCUAUUAGACGUA GAUUCCGAaucu ugu     c
acg     a   uuc  u              A            a   caaug 

Annotation confidence High

Genome context

chr7: 16686087-16686193 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from mtr-MIR2111c

Mature mtr-miR2111c-5p

• Accession: MIMAT0013289
• Description: Medicago truncatula mtr-miR2111c-5p mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUA - 40
• Evidence: experimental ; 454 [1]

Mature mtr-miR2111c-3p

• Accession: MIMAT0054829
• Description: Medicago truncatula mtr-miR2111c-3p mature miRNA
• Sequence: 67 - AGCCUUAGAAUGCAGAUUAUC - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796