Stem-loop mtr-MIR2111h

Accession

MI0011842

Description

Medicago truncatula mtr-MIR2111h precursor miRNA

Literature search

3 open access papers mention mtr-MIR2111h
(9 sentences)

Sequence

149588 reads, 977.0 reads per million, 111 experiments

auuauuggguaaggauuagaUAAUCUGCAUCCUGAGGUUUAUagcaauauuguaguuguuuuuaAUCCUUGGAAUGCAAAUUAUCcuuuccuuauugccaaugcaa
..(((((((((((((...((((((.(((((.((((((.(((.((((((......))))))..))).)))))).))))).))))))...)))))))..))))))...

Structure

-au      --       uua      C     C      U   -U      au 
   uauugg  guaagga   gaUAAU UGCAU CUGAGG UUA  agcaau  u
   ||||||  |||||||   |||||| ||||| |||||| |||  ||||||   
   guaacc  uauuccu   CUAUUA ACGUA GGUUCC Aau  uuguug  g
aac      gu       uuc      A     A      U   uu      au 

Annotation confidence High

Genome context

chr7: 16655725-16655830 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from mtr-MIR2111h

Mature mtr-miR2111h-5p

• Accession: MIMAT0013295
• Description: Medicago truncatula mtr-miR2111h-5p mature miRNA
• Sequence: 21 - UAAUCUGCAUCCUGAGGUUUAU - 42
• Evidence: experimental ; 454 [1]

Mature mtr-miR2111h-3p

• Accession: MIMAT0054830
• Description: Medicago truncatula mtr-miR2111h-3p mature miRNA
• Sequence: 65 - AUCCUUGGAAUGCAAAUUAUC - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796