Stem-loop mtr-MIR2111i

Accession

MI0011843

Description

Medicago truncatula mtr-MIR2111i precursor miRNA

Literature search

3 open access papers mention mtr-MIR2111i
(9 sentences)

Sequence

103870 reads, 731.0 reads per million, 111 experiments

auauugaguuuggauaggaUAAUCUGCAUCCUGAGGUUUAgaauaacagcugcguaauuguaucuaAGCCUUGGAGUGCAGAUUAUCucuuccuuaacaccaaugg
.(((((.(((.(((..(((((((((((((.((((((((((((...((((........)))).)))))))))))).)))))))))))))..)))..)))..))))).

Structure

a     -a   -u   ua             C            aua    cug 
 uauug  guu  gga  ggaUAAUCUGCAU CUGAGGUUUAga   acag   c
 |||||  |||  |||  ||||||||||||| ||||||||||||   ||||    
 guaac  caa  ccu  uCUAUUAGACGUG GGUUCCGAaucu   uguu   g
g     ca   uu   uc             A            --a    aau 

Annotation confidence High

Genome context

Unknown

Mature mtr-miR2111i-5p

• Accession: MIMAT0013296
• Description: Medicago truncatula mtr-miR2111i-5p mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUA - 40
• Evidence: experimental ; 454 [1]

Mature mtr-miR2111i-3p

• Accession: MIMAT0054831
• Description: Medicago truncatula mtr-miR2111i-3p mature miRNA
• Sequence: 67 - AGCCUUGGAGUGCAGAUUAUC - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796