Stem-loop mtr-MIR2111o

Accession

MI0011847

Description

Medicago truncatula mtr-MIR2111o precursor miRNA

Literature search

3 open access papers mention mtr-MIR2111o
(9 sentences)

Sequence

97190 reads, 680.0 reads per million, 111 experiments

aguauugguuaaggauccggUAAUCUGCAUCCUGAGGUUUAaaacaauaaauuuauuguaucuaGUCCUCGGGAUGCUGAUUACCuuuuccuuaugaccaauguaca
..(((((((((((((...(((((((.(((((((((((......((((((....)))))).......))))))))))).)))))))...))))..)))))))))....

Structure

--ag         --    ucc       U           -UUUAaa      a 
    uauugguua  agga   ggUAAUC GCAUCCUGAGG       acaaua a
    |||||||||  ||||   ||||||| |||||||||||       ||||||  
    guaaccagu  uccu   CCAUUAG CGUAGGGCUCC       uguuau u
acau         au    uuu       U           UGaucua      u 

Annotation confidence High

Genome context

chr7: 16621471-16621577 [-]

Mature mtr-miR2111o-5p

• Accession: MIMAT0013300
• Description: Medicago truncatula mtr-miR2111o-5p mature miRNA
• Sequence: 21 - UAAUCUGCAUCCUGAGGUUUA - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2111o-3p

• Accession: MIMAT0054833
• Description: Medicago truncatula mtr-miR2111o-3p mature miRNA
• Sequence: 65 - GUCCUCGGGAUGCUGAUUACC - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796