Stem-loop mtr-MIR2618a

Accession

MI0011884

Description

Medicago truncatula mtr-MIR2618a precursor miRNA

Sequence

guagguuaauguaauuucaguuuacguauguucaauuuagguuaauguaaauucaguuuacuuauguauaugguguagguuaauguaaauucaguuuacguauauucaauuuaguuuaauguaaauucaauuuacguauguuaaauuuagguuaacguaaauuaaguuuacguauguuuauaagagguuaguaugaauuuaguuuaguuauguuuaaucuagguuaauguaaauucaguuuauuuauguucaauuuaaguuaauguaaauuaauuuuacguauguauauaagagauuaguGUGAAUUCAGUUUACGUACGUUcaauuuauguuaauguaa
.((.((((((((((........((((((..((.((((((.((((((.(............((((((((((((..((((((((((.((((((.((..((((((.(((.((((((........)))))).))).))))))..)).)))))).)))))).((((((((((((((..((.(((...))).))..))..))))))))))))((((....)))).(((((((((((((((.......))))))))).))))))(((((((....))))))))))).))))))))))))).)))))).)))))).))..))))))........)))))))))).)).

Structure

g  g          uuucaguu      ug  c      g      g aaauucaguuua            gu    -----------------------------------------------------------------------------------------------------------------------      g      c  uu      u   c      guu 
 ua guuaauguaa        uacgua  uu aauuua guuaau u            cuuauguauaug  guag                                                                                                                       guuaau uaaauu ag  uacgua auu aauuua   u
 || ||||||||||        ||||||  || |||||| |||||| |            ||||||||||||  ||||                                                                                                                       |||||| |||||| ||  |||||| ||| ||||||    
 au uaauuguauu        AUGCAU  GA UUAAGU ugauua a            gaauauauguau  cauu                                                                                                                       caauug auuuaa uu  augcau uaa uuaaau   a
a  g          uaacUUGC      UU  C      G      g ------------            -g    uuaauuaaauguaauugaauuuaacuuguauuuauuugacuuaaauguaauuggaucuaauuuguauugauuugauuuaaguaugauuggagaauauuuguaugcauuugaauuaaaug      g      a  gu      u   c      gua 

Annotation confidence Not enough data

Genome context

chr7: 2591225-2591564 [-]

Mature mtr-miR2618a

• Accession: MIMAT0013337
• Description: Medicago truncatula mtr-miR2618a mature miRNA
• Sequence: 301 - GUGAAUUCAGUUUACGUACGUU - 322
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796