Stem-loop mtr-MIR2618a

Accession

MI0011884

Description

Medicago truncatula mtr-MIR2618a precursor miRNA

Sequence

10766 reads, 116.0 reads per million, 111 experiments

guagguuaauguaauuucaguuuacguauguucaauuuagguuaauguaaauucaguuuacuuauguauaugguguagguuaauguaaauucaguuuacguauauucaauuuaguuuaauguaaauucaauuuacguauguuaaauuuagguuaacguaaauuaaguuuacguauguuuauaagagguuaguaugaauuuaguuuaguuauguuuAAUCUAGGUUAAUGUAAAUUCAGUuuauuuauguucaauuuaaguuaauguaaauuaauuuuacguauguauauaagagauuAGUGUGAAUUCAGUUUACGUACGUucaauuuauguuaauguaa
.((.((((((((((........((((((..((.((((((.((((((.(............((((((((((((..((((((((((.((((((.((..((((((.(((.((((((........)))))).))).))))))..)).)))))).)))))).((((((((((((((..((.(((...))).))..))..))))))))))))((((....)))).(((((((((((((((.......))))))))).))))))(((((((....))))))))))).))))))))))))).)))))).)))))).))..))))))........)))))))))).)).

Structure

g  g          uuucaguu      ug  c      g      g aaauucaguuua            gu    guuaauguaaauucaguuuacguauauucaauuuaguuuaauguaaauucaauuuacguauguuaaauuuagguuaacguaaauuaaguuuacguauguuuauaagagguuaguaugaauuuaguuuaguuauguuuAAUC      -         UC 
 ua guuaauguaa        uacgua  uu aauuua guuaau u            cuuauguauaug  guag                                                                                                                                             UAGGUU AAUGUAAAU  A
 || ||||||||||        ||||||  || |||||| |||||| |            ||||||||||||  ||||                                                                                                                                             |||||| |||||||||  G
 au uaauuguauu        AUGCAU  GA UUAAGU UGAuua a            gaauauauguau  cauu                                                                                                                                             auuuaa uuguauuua  U
a  g          uaacuUGC      UU  C      G      g ------------            -g    ---------------------------------------------------------------------------------------------------------------------------uuaauuaaauguaauuga      c         uu 

Annotation confidence Low

Genome context

chr7: 2591225-2591564 [-]

Mature mtr-miR2618a-5p

• Accession: MIMAT0054866
• Description: Medicago truncatula mtr-miR2618a-5p mature miRNA
• Sequence: 216 - AAUCUAGGUUAAUGUAAAUUCAGU - 239
• Evidence: experimental ; unknown

Mature mtr-miR2618a-3p

• Accession: MIMAT0013337
• Description: Medicago truncatula mtr-miR2618a-3p mature miRNA
• Sequence: 298 - AGUGUGAAUUCAGUUUACGUACGU - 321
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796