Stem-loop mtr-MIR2623

Accession

MI0011890

Description

Medicago truncatula mtr-MIR2623 precursor miRNA

Sequence

9910 reads, 95.0 reads per million, 111 experiments

auuaacaaauaaauaccuUCGGCUGUACUGUCCUUCAUGaacaaauuuggccuucuaaacaaauuguuuagauagacuuuguuguuuAGGAUGGACCGUGUAGCCUAAGuuauuuuauguuaag
.((((((...(((((.(((.((((((((.((((.((.(((((((....(((..((((((((...))))))))..).))...))))))).)).)))).)))))))).))).)))))..)))))).

Structure

a      aau     c   C        U    U  A       auuu  - cu        a 
 uuaaca   aaaua cuU GGCUGUAC GUCC UC UGaacaa    gg c  ucuaaaca  
 ||||||   ||||| ||| |||||||| |||| || |||||||    || |  |||||||| a
 aauugu   uuuau GAA CCGAUGUG CAGG AG Auuuguu    uc g  agauuugu  
g      -au     u   U        C    U  G       -guu  a au        u 

Annotation confidence High

Genome context

chr5: 31771069-31771192 [-]

Mature mtr-miR2623-5p

• Accession: MIMAT0013343
• Description: Medicago truncatula mtr-miR2623-5p mature miRNA
• Sequence: 19 - UCGGCUGUACUGUCCUUCAUG - 39
• Evidence: experimental ; 454 [1]

Mature mtr-miR2623-3p

• Accession: MIMAT0054871
• Description: Medicago truncatula mtr-miR2623-3p mature miRNA
• Sequence: 88 - AGGAUGGACCGUGUAGCCUAAG - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796