Stem-loop mtr-MIR2592g

Accession

MI0011897

Description

Medicago truncatula mtr-MIR2592g precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592g
(2 sentences)

Sequence

38206 reads, 270.0 reads per million, 111 experiments

ugggauaaauucaaaccugcaaaauAACAGGACUCAAGCAUUUCGCcaaacaccucauguuuucccuuugaaaauaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaaaaauuuaauauuuucaaaggagaaacaugaggugcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauuaccu
.(((...(((((((((.((..(((((((((((((((((((((((((.((.(((((((((((((.((((((((((((.(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...))))))))))).)))))))))))).))))))))))))).)))))))))))))))))))))))))))..)).))))))))).)))

Structure

u   aua         c  ca                         c  a             c            a           gag   u c         u      c     c  cc  a    g 
 ggg   aauucaaac ug  aaauAACAGGACUCAAGCAUUUCGC aa caccucauguuuu ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug ca  ga uuga  
 |||   ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
 ucc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaag ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
-   --a         a  ag                         -  c             a            a           aua   c -         u      -     a  uc  -    u 

Annotation confidence High

Genome context

chr3: 35460535-35460792 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR2592g

Mature mtr-miR2592g-5p

• Accession: MIMAT0054875
• Description: Medicago truncatula mtr-miR2592g-5p mature miRNA
• Sequence: 26 - AACAGGACUCAAGCAUUUCGC - 46
• Evidence: experimental ; unknown

Mature mtr-miR2592g-3p

• Accession: MIMAT0013350
• Description: Medicago truncatula mtr-miR2592g-3p mature miRNA
• Sequence: 219 - AAAUGCUUGAGUCCUGUUGUU - 239
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796