Stem-loop mtr-MIR2592k

Accession

MI0011899

Description

Medicago truncatula mtr-MIR2592k precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592k
(2 sentences)

Sequence

35390 reads, 246.0 reads per million, 111 experiments

gagauaauucaaaccugcaaaacaacaggacucaaacauuucgccaaacaccucauguuuucccuuugaaaauaauaaauuuuugugaggcuugcUUUAGAUGAUGGUAUUCAAGUGCCAccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaaaaauuuaauauuuucaaaggagaaacaugaggugcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauuaccu
.((.((((((((((.((..((((((((((((((((.((((((((.((.(((((((((((((.((((((((((((.(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...))))))))))).)))))))))))).))))))))))))).)))))))))).))))))))))))))))..)).)))))))))).))

Structure

g  a          c  ca                a        c  a             c            a           gag   u c         U      C     C  cc  a    g 
 ag uaauucaaac ug  aaacaacaggacucaa cauuucgc aa caccucauguuuu ccuuugaaaaua uaaauuuuugu   gcu g UUUAGAUGA GGUAUU AAGUG CA  ga uuga  
 || |||||||||| ||  |||||||||||||||| |||||||| || ||||||||||||| |||||||||||| |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
 uc auuaaguuug ac  uUUGUUGUCCUGAGUU GUAAAgcg uu guggaguacaaag ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
-  c          a  ag                C        -  c             a            a           aua   c -         u      -     a  uc  -    u 

Annotation confidence Low

Genome context

chr6: 16339495-16339750 [-]

Mature mtr-miR2592k-5p

• Accession: MIMAT0054877
• Description: Medicago truncatula mtr-miR2592k-5p mature miRNA
• Sequence: 96 - UUUAGAUGAUGGUAUUCAAGUGCCA - 120
• Evidence: experimental ; unknown

Mature mtr-miR2592k-3p

• Accession: MIMAT0013352
• Description: Medicago truncatula mtr-miR2592k-3p mature miRNA
• Sequence: 217 - AAAUGCUUGAGUCCUGUUGUU - 237
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796