Stem-loop mtr-MIR2592l

Accession

MI0011900

Description

Medicago truncatula mtr-MIR2592l precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592l
(2 sentences)

Sequence

49838 reads, 367.0 reads per million, 111 experiments

ggguaauucaaacuugccaaacgaccaugacucaagcauuuugcccaacguucauguuuuuccuuugaaaagauuaaauucuuguuaugcugguuuagaugaagguaUUAAGUGUCAAGGAAUGAACaucauuucauuggcacuugaauaccaccaucuaaagcaagucuaacaaaauuuauucuuuucaaaggaaaaacaugaaugcggggcgAAAUGCUUGAGUCCUGUUGUUuggcaaguuugacuuuacc
.(((((.((((((((((((((((((...((((((((((((((((((..(((((((((((((((((((((((((.((((((.((((((.((((.((((((((..((((((((((((((((((((((...))))))).)))))))))).)))))..)))))))).).))).)))))))))))).)))))))))))))))))))))))))..))))))))))))))))))..))))))))))))))))))..)))))

Structure

g     -u                  cau                  aa                         u      c      u   - g        aa     -          -       A 
 gguaa  ucaaacuugccaaacgac   gacucaagcauuuugccc  cguucauguuuuuccuuugaaaaga uaaauu uuguua gcu g uuuagaug  gguaU UAAGUGUCAA GGAAUGA  
 |||||  ||||||||||||||||||   ||||||||||||||||||  ||||||||||||||||||||||||| |||||| |||||| ||| | ||||||||  ||||| |||||||||| ||||||| C
 ccauu  aguuugaacgguUUGUUG   CUGAGUUCGUAAAgcggg  guaaguacaaaaaggaaacuuuucu auuuaa aacaau uga c aaaucuac  ccaua guucacgguu cuuuacu  
-     uc                  -UC                  gc                         u      -      c   a g        ca     a          a       a 

Annotation confidence Low

Genome context

chr4: 38243118-38243371 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592l

Mature mtr-miR2592l-5p

• Accession: MIMAT0054878
• Description: Medicago truncatula mtr-miR2592l-5p mature miRNA
• Sequence: 108 - UUAAGUGUCAAGGAAUGAAC - 127
• Evidence: experimental ; unknown

Mature mtr-miR2592l-3p

• Accession: MIMAT0013353
• Description: Medicago truncatula mtr-miR2592l-3p mature miRNA
• Sequence: 215 - AAAUGCUUGAGUCCUGUUGUU - 235
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796