Stem-loop mtr-MIR2592n

Accession

MI0011902

Description

Medicago truncatula mtr-MIR2592n precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592n
(2 sentences)

Sequence

20542 reads, 124.0 reads per million, 111 experiments

ggguaauucaaacuugccaagcggccaugacucaagcauuucgcccagcauucauguuuuuccuuuaaaaagauuaaauucuuguuaugcuGGUUUAGAUGAAGGUAUUAAGUGccaaagaaugaaccucauuuuguuggaacuugaauaucaucaucuaaagcaagccuaaaaaaaaguuauucuuuucaaaggaaaaauaugaaugcggggugAAAUGCUUGAGUCCUGUUGUUuugcaaguuugaauuuacc
((..(((((((((((((.(((((((...((((((((((((((((((.(((((((((((((((((((.((((((.(((.......(((.((((.(((((((((.((((((((((.(((((((((((...))))))).)))).))))).))))).))))))))).).))).))).......))).)))))).))))))))))))))))))).))))))))))))))))))..))))))).)))))))))))))..))

Structure

  gu             c       cau                  a                   a      u   auucuug   u   - G         A     -     G    -       a 
gg  aauucaaacuugc aagcggc   gacucaagcauuucgccc gcauucauguuuuuccuuu aaaaga uaa       uua gcu G UUUAGAUGA GGUAU UAAGU ccaa agaauga  
||  ||||||||||||| |||||||   |||||||||||||||||| ||||||||||||||||||| |||||| |||       ||| ||| | ||||||||| ||||| ||||| |||| ||||||| c
cc  uuaaguuugaacg uUUGUUG   CUGAGUUCGUAAAguggg cguaaguauaaaaaggaaa uuuucu auu       aau cga c aaaucuacu cuaua guuca gguu uuuuacu  
  au             u       -UC                  g                   c      u   gaaaaaa   c   a g         a     a     a    g       c 

Annotation confidence Low

Genome context

chr4: 42952619-42952873 [-]

Mature mtr-miR2592n-5p

• Accession: MIMAT0054880
• Description: Medicago truncatula mtr-miR2592n-5p mature miRNA
• Sequence: 92 - GGUUUAGAUGAAGGUAUUAAGUG - 114
• Evidence: experimental ; unknown

Mature mtr-miR2592n-3p

• Accession: MIMAT0013355
• Description: Medicago truncatula mtr-miR2592n-3p mature miRNA
• Sequence: 216 - AAAUGCUUGAGUCCUGUUGUU - 236
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796