Stem-loop mtr-MIR2111j

Accession

MI0011907

Description

Medicago truncatula mtr-MIR2111j precursor miRNA

Literature search

3 open access papers mention mtr-MIR2111j
(9 sentences)

Sequence

149500 reads, 977.0 reads per million, 111 experiments

uuauuggguaaggauuagaUAAUCUGCAUCCUGAGGUUUAUaacaauauuuuagcugucuuuAACCUUAGAAUGCAGAUUAUCcuuuccuuauugccaaugc
.(((((((((((((...((((((((((((.((((((((.(..(((..........)))..).)))))))).))))))))))))...)))))))..)))))).

Structure

u      --       uua            C        U Ua   auau 
 uauugg  guaagga   gaUAAUCUGCAU CUGAGGUU A  aca    u
 ||||||  |||||||   |||||||||||| |||||||| |  |||     
 guaacc  uauuccu   CUAUUAGACGUA GAUUCCAA u  ugu    u
c      gu       uuc            A        u uc   cgau 

Annotation confidence High

Genome context

chr7: 16649192-16649293 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mtr-MIR2111j

Mature mtr-miR2111j-5p

• Accession: MIMAT0013360
• Description: Medicago truncatula mtr-miR2111j-5p mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUAU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2111j-3p

• Accession: MIMAT0054882
• Description: Medicago truncatula mtr-miR2111j-3p mature miRNA
• Sequence: 63 - AACCUUAGAAUGCAGAUUAUC - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796