Stem-loop mtr-MIR2111k

Accession

MI0011908

Description

Medicago truncatula mtr-MIR2111k precursor miRNA

Literature search

3 open access papers mention mtr-MIR2111k
(9 sentences)

Sequence

94604 reads, 660.0 reads per million, 111 experiments

auauuggguggggaugggaUAAUCUGCAUCCUGAGGUUUAgaacaauaguuucuucauuuccuuaaaaagaaaauaguugcguaauuguuucUAAGCCUUGGAUUGUAGAUUAUuuuuuccuuaacaucaaugc
.(((((((((((((.(((((((((((((..(((((((((((((((((.((..((...((((........))))..))..))...)))).)))))))))))))..))))))))))))).))))).)).)))))).

Structure

a      -  -     u             UC             -    --a  uu  uca    cuu 
 uauugg gu gggga gggaUAAUCUGCA  CUGAGGUUUAgaa caau   gu  cu   uuuc   a
 |||||| || ||||| |||||||||||||  ||||||||||||| ||||   ||  ||   ||||    
 guaacu ca uuccu uuuUAUUAGAUGU  GGUUCCGAAUcuu guua   cg  ga   aaag   a
c      a  a     u             UA             u    aug  uu  -ua    aaa 

Annotation confidence High

Genome context

chr7: 16644233-16644366 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mtr-MIR2111k

Mature mtr-miR2111k-5p

• Accession: MIMAT0013361
• Description: Medicago truncatula mtr-miR2111k-5p mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUA - 40
• Evidence: experimental ; 454 [1]

Mature mtr-miR2111k-3p

• Accession: MIMAT0054883
• Description: Medicago truncatula mtr-miR2111k-3p mature miRNA
• Sequence: 93 - UAAGCCUUGGAUUGUAGAUUAU - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796