Stem-loop mtr-MIR2638a

Accession

MI0011951

Description

Medicago truncatula mtr-MIR2638a precursor miRNA

Sequence

guuacuaaucauuccaaucugccacugcaaauauuaaucauuugacuuuugguccuaauuaguuuuuuuuugcugagaugggcuaucauuagcgacguggugccuauguggcaagugaugauuggacgaggugguuggcuuaaauaggucuuuugucccugcaaauauauaucauuugaauuuucaucccuaaaguuacuaaucagauguaauuaggacuauuuuucaaAUGAUUAAUAUUUGCAGUGGCagauuggaaggauuaguaa
.(((((((((.((((((((((((((((((((((((((((((((((....((((((((((((..........(((......)))(((((((.((.((((((...)))))).)).)))))))...((((((((.....(((((....)))))))))))))..............(((((((.......................)))))))))))))))))))....)))))))))))))))))))))))))))))))))).)))))))))

Structure

g         a                                  cuuu            -------------------------------------------------------------------guuuuuuuuugcugagaugggc       a  g      u 
 uuacuaauc uuccaaucugccacugcaaauauuaaucauuuga    ugguccuaauua                                                                                         uaucauu gc acgugg  
 ||||||||| ||||||||||||||||||||||||||||||||||    ||||||||||||                                                                                         ||||||| || |||||| g
 aaugauuag aagguuagaCGGUGACGUUUAUAAUUAGUAaacu    aucaggauuaau                                                                                         guaguga cg uguauc  
-         g                                  uuuu            guagacuaaucauugaaaucccuacuuuuaaguuuacuauauauaaacgucccuguuuucuggauaaauucgguugguggagcagguua       a  g      c 

Annotation confidence Not enough data

Genome context

chr5: 6758481-6758749 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2638a

Mature mtr-miR2638a

• Accession: MIMAT0013404
• Description: Medicago truncatula mtr-miR2638a mature miRNA
• Sequence: 230 - AUGAUUAAUAUUUGCAGUGGC - 250
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796