Stem-loop mtr-MIR2640

Accession

MI0011954

Description

Medicago truncatula mtr-MIR2640 precursor miRNA

Sequence

aUUCCUUGCCGGAGCUGGACUACagguaaaaguuaauucagagauacuauuguugcaaaauauaacuuucuuguacugaaauuaguuaggcuuaggcggcauaaaccuuuucuacacauuugacucaaugaauuuuuuaagggauuuaaagagcaaccauucuauuuucuugaauuacaugccaauauugagaaauaaguagaguacuuaccuagaauuaugauuacacuagugaguagccagccgcacgccucucucuuuaacuucugaggaauaguuuuugcaaagaa
.(((.((((.(((((((..((.((((....((((((...(((((......((((....))))((((((((.......)))...)))))(((...((((((.........((((((..((((..(((((((.....(((((((((.....((((......))))..)))))))))...........)))))))))))..))))))(((((((.(((.............))))))))))))).)))....))))))))..))))))))))))...))))))).)))).)))

Structure

a   C    C       -GA  A    uaaa      uuc     uacuauuguugcaaaauauaacuuucuuguacugaaauuaguua   -uua   -   -------------------------auaaaccuu      ac    ga       ------aauuu         uuuaa    ca 
 UUC UUGC GGAGCUG   CU Cagg    aguuaa   agaga                                            ggc    ggc ggc                                  uucuac  auuu  cucaaug           uuuaaggga     agag  a
 ||| |||| |||||||   || ||||    ||||||   |||||                                            |||    ||| |||                                  ||||||  ||||  |||||||           |||||||||     ||||   
 aag aacg uuuugau   ga gucu    ucaauu   ucucu                                            ccg    ccg ccg                                  gagaug  uaaa  gaguuau           aaguucuuu     ucuu  c
-   a    u       aag  -    ----      -uc     --------------------------------------------   cacg   a   augagugaucacauuaguauuaagauccauucau      aa    --       aaccguacauu         ---ua    ac 

Annotation confidence Not enough data

Genome context

chr1: 33982196-33982485 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2640

Mature mtr-miR2640

• Accession: MIMAT0013407
• Description: Medicago truncatula mtr-miR2640 mature miRNA
• Sequence: 2 - UUCCUUGCCGGAGCUGGACUAC - 23
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796