Stem-loop mtr-MIR2645

Accession

MI0011961

Description

Medicago truncatula mtr-MIR2645 precursor miRNA

Literature search

1 open access papers mention mtr-MIR2645
(1 sentences)

Sequence

aUUUCUAGAGAUGAGCAUAUAUugaagaauuauggaguagaugaaguuuacaaaguuccucucuuggauuggacuaacucucuucaauuauugugucgaaaagcuuucaaacuugaucauauuuugaauaguuaugaaggguugguuaauggcauacuacauuaugccaauggccuaccacuugcaauuaaaguauuggguucauuuuug
.....(((((((((((...........(((((((((((((((.((((((..(((((((..(.(...(((((((.........)))))))...).)..))...))))).)))))).))).))))))..))))))...((((((.(((((.(((((((......))))))).))))).))).))).((((......)))).)))))))))))

Structure

aUUUC           -------------------------------------------------------AUAUAUugaag      --      -   g      ac     ---  cu u uug       cua 
     UAGAGAUGAGC                                                                  aauuau  ggagua gau aaguuu  aaagu   uc  c c   gauugga   a
     |||||||||||                                                                  ||||||  |||||| ||| ||||||  |||||   ||  | |   |||||||   c
     guuuuuacuug                                                                  uugaua  uuuuau cua uucaaa  uuucg   ag  g g   uuaacuu   u
-----           gguuaugaaauuaacguucaccauccgguaaccguauuacaucauacgguaauugguugggaagua      ag      a   g      -c     aaa  cu u uua       cuc 

Annotation confidence Not enough data

Genome context

chr4: 27289822-27290031 [+]

Mature mtr-miR2645

• Accession: MIMAT0013414
• Description: Medicago truncatula mtr-miR2645 mature miRNA
• Sequence: 2 - UUUCUAGAGAUGAGCAUAUAU - 22
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796