Stem-loop mtr-MIR2646a

Accession

MI0011962

Description

Medicago truncatula mtr-MIR2646a precursor miRNA

Sequence

16526 reads, 161.0 reads per million, 111 experiments

uuuucugauuuuauggucccCAUGACAUUUAGUGAUGAUGUgucuguuuuuuuaucaauuaaugugugccacauguguaauuccauuuuuuaaaaaauaaaaaaaaugguauuuuucagauuuccagcacuaaauucuauuguuggucacgugccuccuucucucaaaaucugaaaaauaccauuuuuuuauuuuuuuuaaaaauaaaauuacacacguggcacacauuaauugauaaaaaacagacacaucagcauuaaaugUCACGGGGACCAUAAAAUCAGaaagg
(((((((((((((((((((((.((((((((((((.(((((((((((((((((.(((((((((((((((((((.(((((((((..((((((.((((((..((((((((((((((((((((((((((((((.((.....)).))))))....................))))))))))))))))))))))))..)))))).))))))..))))))))).)))))))))))))))))))))))))))))))))))).)))))))))))).))))))))))))))))))))).

Structure

-                     A            A                 u                   a         cc      u      ua                        --------------------      c  a 
 uuuucugauuuuauggucccC UGACAUUUAGUG UGAUGUgucuguuuuuu aucaauuaaugugugccac uguguaauu  auuuuu aaaaaa  aaaaaaaugguauuuuucagauuu                    ccagca ua a
 ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||  |||||| ||||||  ||||||||||||||||||||||||                    |||||| || u
 gaaaGACUAAAAUACCAGGGG ACUguaaauuac acuacacagacaaaaaa uaguuaauuacacacggug acacauuaa  uaaaaa uuuuuu  uuuuuuuaccauaaaaagucuaaa                    gguugu au u
g                     C            g                 -                   c         aa      u      ua                        acucucuuccuccgugcacu      u  c 

Annotation confidence Low

Genome context

chr4: 28796917-28797205 [-]

Mature mtr-miR2646a-5p

• Accession: MIMAT0013415
• Description: Medicago truncatula mtr-miR2646a-5p mature miRNA
• Sequence: 21 - CAUGACAUUUAGUGAUGAUGU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2646a-3p

• Accession: MIMAT0054930
• Description: Medicago truncatula mtr-miR2646a-3p mature miRNA
• Sequence: 264 - UCACGGGGACCAUAAAAUCAG - 284
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796