Stem-loop mtr-MIR2647c

Accession

MI0011966

Description

Medicago truncatula mtr-MIR2647c precursor miRNA

Sequence

aAUUCACGGGGACGAACCUCCUucguugaaaguuugcuuuauucuuuugauauaucuauccaugauacaaggaaguaaugcauuuaaguucaaucaagcuuggccuucaucagaauuuccguugacgggacuccacaggagguacaaccuuuaaguugauacugagggauggagggaggguugccccuguugaa
..(((((((((.(((.((((((((((((((....(((.(((((.(((((...((((.......))))))))).))))).)))......))))))........((((((....((..(((((....))))).))....)))))).((.((((((.((....)))))))).)))))))))).))).))))).))))

Structure

aA    -     A   A        -----------------------------------------------------------------------------      --aguu   u     c     aua    ua 
  UUCA CGGGG CGA CCUCCUuc                                                                             guugaa      ugc uuauu uuuug   uauc  u
  |||| ||||| ||| ||||||||                                                                             ||||||      ||| ||||| |||||   ||||  c
  aagu guccc guu ggagggag                                                                             uaacuu      acg aauga ggaac   auag  c
--    u     c   g        guagggagucauaguugaauuuccaacauggaggacaccucagggcaguugccuuuaagacuacuuccgguucgaac      gaauuu   u     a     ---    ua 

Annotation confidence Not enough data

Genome context

chr4: 41982156-41982349 [+]

Mature mtr-miR2647c

• Accession: MIMAT0013419
• Description: Medicago truncatula mtr-miR2647c mature miRNA
• Sequence: 2 - AUUCACGGGGACGAACCUCCU - 22
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796