Stem-loop mtr-MIR2649

Accession

MI0011968

Description

Medicago truncatula mtr-MIR2649 precursor miRNA

Sequence

agcuugauuguaagcaaguggauaaauggcaccuuuuguaagcucuucauauucauaaagagcuuacaAAAGGUGCCAAUUAUGAGUGUguuaaugaauauggua
.(((..(((...((((.....((((.(((((((((((((((((((((.((....)).))))))))))))))))))))).)))).....))))....)))..))).

Structure

a   ug   -gua    agugg    a                     c  a 
 gcu  auu    agca     auaa uggcaccuuuuguaagcucuu au u
 |||  |||    ||||     |||| ||||||||||||||||||||| ||  
 ugg  uaa    uugU     UAUU ACCGUGGAAAacauucgagaa ua u
a   ua   guaa    GUGAG    A                     a  c 

Annotation confidence Not enough data

Genome context

chr6: 19670625-19670729 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2649

Mature mtr-miR2649

• Accession: MIMAT0013421
• Description: Medicago truncatula mtr-miR2649 mature miRNA
• Sequence: 69 - AAAGGUGCCAAUUAUGAGUGU - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796