Stem-loop mtr-MIR2652a

Accession

MI0011971

Description

Medicago truncatula mtr-MIR2652a precursor miRNA

Sequence

gcgauuauggugcauaaggaaauucuuaugcacccugcauaaauccauaaauaguuuuggaguacaacuaacaaaaaccauuuccacagcaaaaugguuuugacauaauuuuaugcagggugcuggaaauccuuaugcagggugcuggaaaccauuaaguacaucuaaugguuuuggaguacaacucacagaaaccauuucuggauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaccauaaucg
.((((((((((((((((((((((((((((((((((((((((((((((.((((.((((((((((..........((((((((((........))))))))))............((((((((.......))))...))))..(((((.((((((((((........))))))))))..))))).)))).))).))).)))).))))))))))))))))))))))))))))))))))))))))))))))

Structure

g                                              u    a   -   -    acaacuaacaaaaaccauuuccacagcaaaaugguuuugacauaauuuuaugcagggugcuggaaauccuuaugcagg     -g          agu 
 cgauuauggugcauaaggaaauucuuaugcacccugcauaaaucca aaau guu uug gagu                                                                              gugcu  gaaaccauua   a
 |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||                                                                              |||||  ||||||||||    
 gcuaauaccacguauuccuUUAGGAAUACGUGGGACGUAUuuaggu uuua caa gac cuca                                                                              cauga  uuuugguaau   c
-                                              c    c   a   a    -----------------------------------------------------------------------------a     gg          cua 

Annotation confidence Not enough data

Genome context

chr1: 30023475-30023721 [-]

Mature mtr-miR2652a

• Accession: MIMAT0013424
• Description: Medicago truncatula mtr-miR2652a mature miRNA
• Sequence: 208 - UAUGCAGGGUGCAUAAGGAUU - 228
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796