miRBase entry: mtr-MIR2652a

Stem-loop mtr-MIR2652a


Accession
MI0011971
Description
Medicago truncatula mtr-MIR2652a precursor miRNA


Sequence

46462 reads, 479.0 reads per million, 111 experiments
gcgauuauggugcauaaggaaauucuuaugcacccugcauaaauccauaaauaguuuuggaguacaacuaacaaaaaccauuuccacagcaaaaugguuuugacauaauuUUAUGCAGGGUGCUGGAAAuccuuaugcagggugcuggaaaccauuaaguacaucuaaugguuuuggaguacaacucacagaaaccauuucuggauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaccauaaucg
.((((((((((((((((((((((((((((((((((((((((((((((.((((.((((((((((..........((((((((((........))))))))))............((((((((.......))))...))))..(((((.((((((((((........))))))))))..))))).)))).))).))).)))).))))))))))))))))))))))))))))))))))))))))))))))

Structure
g                                              u    a   -   -    acaacuaacaaaaaccauuuccacagcaaaaugguuuugacauaauuUUA    ---    GC 
 cgauuauggugcauaaggaaauucuuaugcacccugcauaaaucca aaau guu uug gagu                                                  UGCA   GGGU  U
 |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||                                                  ||||   ||||  G
 gcuaauaccacguauuccuUUAGGAAUACGUGGGACGUAUuuaggu uuua caa gac cuca                                                  acgu   ccuA  G
-                                              c    c   a   a    ------acaugagguuuugguaaucuacaugaauuaccaaaggucguggg    auu    AA 


Annotation confidence Low
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Genome context
chr1: 30023475-30023721 [-]

Database links

Mature mtr-miR2652a-5p

Accession MIMAT0054936
Description Medicago truncatula mtr-miR2652a-5p mature miRNA
Sequence 111 - UUAUGCAGGGUGCUGGAAA - 129
Evidence experimental
unknown

Mature mtr-miR2652a-3p

Accession MIMAT0013424
Description Medicago truncatula mtr-miR2652a-3p mature miRNA
Sequence 208 - UAUGCAGGGUGCAUAAGGAUU - 228
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796