Stem-loop mtr-MIR2652f

Accession

MI0011976

Description

Medicago truncatula mtr-MIR2652f precursor miRNA

Sequence

24625 reads, 228.0 reads per million, 111 experiments

uguuuucaauugcacccugcuggaucaaagaaaaccauuaaguacaucuaaugauuuuggaguACAACUCACAGAAACCAUUUCCACugcaaaaugguuuuagaguccaacucacaaaaacuauuuucacugcaaaauaguuuuggcauaaugggcugggauuUAUGCAGGGUGCAUAAGGAUUcc
.(..(((...((((((((((((((((..((....((((((.((((.(((((.....))))))))).((((...((((((((((........)))))))))).))))..........(((((((((((......)))))))))))....)))))).))..)))))).))))))))))...)))..).

Structure

u uu   aau          -      aa  aaaa      ----------------aguacaucuaaugauuuuggaguACA    ACA          CCA 
 g  uuc   ugcacccugc uggauc  ag    ccauua                                          ACUC   GAAACCAUUU   C
 |  |||   |||||||||| ||||||  ||    ||||||                                          ||||   ||||||||||    
 c  AGG   ACGUGGGACG AUuuag  uc    gguaau                                          ugag   uuuugguaaa   u
c UU   AAU          U      gg  ---g      acgguuuugauaaaacgucacuuuuaucaaaaacacucaacc    --a          acg 

Annotation confidence Low

Genome context

chr5: 34904296-34904481 [+]

Mature mtr-miR2652f-5p

• Accession: MIMAT0054941
• Description: Medicago truncatula mtr-miR2652f-5p mature miRNA
• Sequence: 64 - ACAACUCACAGAAACCAUUUCCAC - 87
• Evidence: experimental ; unknown

Mature mtr-miR2652f-3p

• Accession: MIMAT0013429
• Description: Medicago truncatula mtr-miR2652f-3p mature miRNA
• Sequence: 164 - UAUGCAGGGUGCAUAAGGAUU - 184
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796